PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I01308.1.p
Common NameEUGRSUZ_I01308, LOC104418869
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SRS
Protein Properties Length: 221aa    MW: 24277.8 Da    PI: 7.6997
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I01308.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702182.12.3e-56131554153
            DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 
                        +++CqdCGnqak+dC+++RCRtCCks+gf+C+thvkstWvpa++r +r+qq+++ ++      ++   +++r+ + ++ +    t+   + +
  Eucgr.I01308.1.p  13 SSSRCQDCGNQAKRDCEYRRCRTCCKSKGFHCQTHVKSTWVPAYRRHQRHQQEQQHQHL----LNSVPVHQQRSIQPQNPKRHRDTS---TFP 98 
                       5679********************************************98887665333....344555555655333333333333...334 PP

            DUF702  97 kkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGle 153
                          +e  +lP+evss+a frcvrvs  dd + e++aYqt+v+igGh fkGiLydqG++
  Eucgr.I01308.1.p  99 GLGTE-GNLPAEVSSTATFRCVRVSIEDDdAAEHYAYQTSVNIGGHAFKGILYDQGPD 155
                       44444.56****************9888845566**********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.4E-5514155IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.0E-271758IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.0E-23106154IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MMMMRGQSGM STSSSRCQDC GNQAKRDCEY RRCRTCCKSK GFHCQTHVKS TWVPAYRRHQ  60
RHQQEQQHQH LLNSVPVHQQ RSIQPQNPKR HRDTSTFPGL GTEGNLPAEV SSTATFRCVR  120
VSIEDDDAAE HYAYQTSVNI GGHAFKGILY DQGPDTCYGT AAGESSSGDP TALPSNNDDN  180
NPAICTLASA SAPEESIYPC SYPFPLSASI SGTHYIFPKS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I01308.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028633.11e-167PREDICTED: protein SHI RELATED SEQUENCE 3 isoform X1
TrEMBLA0A059ANI61e-167A0A059ANI6_EUCGR; Uncharacterized protein
STRINGPOPTR_0009s12450.13e-61(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91882638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.15e-45SHI-related sequence 5